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Structure of Rabbit Actin In Complex With Reidispongiolide A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QZ5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 100mM Na/MES/Acetate, pH 5.5, 7% methyl ether poly(ethylene glycol) 5000, 100mM CaCl2, 1mM TCEP, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.05 45.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 171.181 α = 90 b = 54.694 β = 95.97 c = 40.674 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-2 Rosenbaum-Rock monochromators and mirrors 2004-03-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9641 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 35 98.1 0.041 55.9 5 48798 23.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.66 96.7 0.11 18.6 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1QZ5 1.6 35 48540 46318 2475 97.85 0.185 0.16484 0.16354 0.1775 0.18852 0.1979 RANDOM 14.624
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.54 -0.61 0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.286 r_scangle_it 2.979 r_scbond_it 1.836 r_angle_other_deg 1.393 r_angle_refined_deg 1.349 r_mcangle_it 1.135 r_mcbond_it 0.596 r_nbd_other 0.236 r_symmetry_vdw_other 0.21 r_nbd_refined 0.203
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.286 r_scangle_it 2.979 r_scbond_it 1.836 r_angle_other_deg 1.393 r_angle_refined_deg 1.349 r_mcangle_it 1.135 r_mcbond_it 0.596 r_nbd_other 0.236 r_symmetry_vdw_other 0.21 r_nbd_refined 0.203 r_symmetry_vdw_refined 0.202 r_symmetry_hbond_refined 0.142 r_xyhbond_nbd_refined 0.123 r_chiral_restr 0.085 r_nbtor_other 0.083 r_metal_ion_refined 0.064 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2801 Nucleic Acid Atoms Solvent Atoms 374 Heterogen Atoms 121
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing