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Ternary complex of the catalytic core of REV1 with DNA and dCTP.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 4.24 70.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 177.32 α = 90 b = 200.906 β = 90 c = 55.586 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH 2 1 x-ray M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X6A NSLS X6A 2 SYNCHROTRON NSLS BEAMLINE X4A 0.97923, 0.97906, 0.96859 NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.3 50 99.3 0.112 13.3 5.3 42768 42757
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.32 50 40635 2118 98.5 0.19892 0.19686 0.1998 0.23781 0.1974 RANDOM 33.393
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.68 -0.46 -3.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.488 r_scangle_it 6.302 r_scbond_it 4.353 r_angle_refined_deg 3.047 r_mcangle_it 2.645 r_mcbond_it 1.485 r_symmetry_vdw_refined 0.376 r_nbd_refined 0.259 r_chiral_restr 0.2 r_xyhbond_nbd_refined 0.171
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.488 r_scangle_it 6.302 r_scbond_it 4.353 r_angle_refined_deg 3.047 r_mcangle_it 2.645 r_mcbond_it 1.485 r_symmetry_vdw_refined 0.376 r_nbd_refined 0.259 r_chiral_restr 0.2 r_xyhbond_nbd_refined 0.171 r_symmetry_hbond_refined 0.08 r_bond_refined_d 0.035 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3378 Nucleic Acid Atoms 569 Solvent Atoms 140 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling