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Crystal structure of Glutamate 5-kinase from Campylobacter jejuni
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 23% PEG 3350, .1M Hepes 7.5, .2M NaMalonate, Cryo 30% sucrose, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.59 52.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.597 α = 90 b = 99.409 β = 90 c = 124.547 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-02-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A .9791 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 20 96.1 0.103 10.4 3.7 59989 59989 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.28 89.6 0.326 3.2 3 5524
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 20 -3 59953 59953 3043 95.71 0.18005 0.18005 0.17777 0.183 0.2213 0.1817 RANDOM 23.856
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.62 -0.85 1.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.842 r_dihedral_angle_4_deg 18.193 r_dihedral_angle_3_deg 14.45 r_dihedral_angle_1_deg 5.992 r_scangle_it 2.224 r_scbond_it 1.576 r_angle_refined_deg 1.208 r_mcangle_it 1.014 r_mcbond_it 0.841 r_angle_other_deg 0.741
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.842 r_dihedral_angle_4_deg 18.193 r_dihedral_angle_3_deg 14.45 r_dihedral_angle_1_deg 5.992 r_scangle_it 2.224 r_scbond_it 1.576 r_angle_refined_deg 1.208 r_mcangle_it 1.014 r_mcbond_it 0.841 r_angle_other_deg 0.741 r_symmetry_vdw_other 0.256 r_nbd_refined 0.201 r_nbtor_refined 0.173 r_nbd_other 0.169 r_xyhbond_nbd_refined 0.169 r_symmetry_vdw_refined 0.145 r_symmetry_hbond_refined 0.126 r_mcbond_other 0.113 r_nbtor_other 0.081 r_chiral_restr 0.065 r_bond_refined_d 0.011 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7570 Nucleic Acid Atoms Solvent Atoms 712 Heterogen Atoms 135
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing