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Crystal Structure of SB27 TCR in complex with HLA-B*3508-13mer peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.7 277 200mM Potassium Iodide, 16% PEG 3350, 100mM Na Cacodylate, pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.66 53.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.154 α = 90 b = 213.282 β = 89.94 c = 122.303 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-04-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 1 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 12.98 134769
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 0.501 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 50 133366 4033 95.54 0.247 0.247 0.246 0.2657 0.278 0.2841 RANDOM 10.386
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.06 0.24 5.54 -2.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.903 r_dihedral_angle_4_deg 16.732 r_dihedral_angle_3_deg 15.331 r_dihedral_angle_1_deg 5.368 r_scangle_it 3.992 r_scbond_it 2.413 r_mcangle_it 1.606 r_angle_refined_deg 1.053 r_mcbond_it 0.841 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.903 r_dihedral_angle_4_deg 16.732 r_dihedral_angle_3_deg 15.331 r_dihedral_angle_1_deg 5.368 r_scangle_it 3.992 r_scbond_it 2.413 r_mcangle_it 1.606 r_angle_refined_deg 1.053 r_mcbond_it 0.841 r_nbtor_refined 0.3 r_symmetry_vdw_refined 0.281 r_nbd_refined 0.181 r_symmetry_hbond_refined 0.172 r_xyhbond_nbd_refined 0.129 r_chiral_restr 0.068 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 26348 Nucleic Acid Atoms Solvent Atoms 239 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction SCALEPACK data scaling PHASER phasing