2AHP

GCN4 leucine zipper, mutation of Lys15 to epsilon-azido-Lys


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.52950.065 M Tris, 5.2% w/v PEG 8000, 35% v/v anhydrous glycerol, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.0238.97

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 100.162α = 90
b = 30.397β = 95.21
c = 21.716γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IVosmic confocal mirrors2004-07-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1229.0898.70.03610.63.4944732
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
22.0798980.143.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT229.08447220498.720.1920.1920.1890.263RANDOM17.043
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.15-0.770.45-0.44
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.111
r_dihedral_angle_3_deg14.942
r_dihedral_angle_4_deg11.931
r_dihedral_angle_1_deg4.588
r_scangle_it4.096
r_scbond_it2.549
r_angle_refined_deg1.204
r_mcangle_it1.196
r_mcbond_it0.841
r_angle_other_deg0.78
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.111
r_dihedral_angle_3_deg14.942
r_dihedral_angle_4_deg11.931
r_dihedral_angle_1_deg4.588
r_scangle_it4.096
r_scbond_it2.549
r_angle_refined_deg1.204
r_mcangle_it1.196
r_mcbond_it0.841
r_angle_other_deg0.78
r_symmetry_hbond_refined0.455
r_symmetry_vdw_refined0.298
r_xyhbond_nbd_refined0.23
r_nbd_refined0.206
r_symmetry_vdw_other0.197
r_nbd_other0.171
r_nbtor_refined0.171
r_mcbond_other0.159
r_nbtor_other0.082
r_chiral_restr0.068
r_bond_refined_d0.012
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms544
Nucleic Acid Atoms
Solvent Atoms65
Heterogen Atoms

Software

Software
Software NamePurpose
d*TREKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
CrystalCleardata reduction
PHASERphasing