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Crystal structure of the carbinolamine intermediate in the reductive half-reaction of aromatic amine dehydrogenase (AADH) with tryptamine. F222 form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 292 PEG 2000 MME, ammonium sulphate, sodium cacodylate, tryptamine, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.913 α = 90 b = 157.337 β = 90 c = 267.996 γ = 90
Symmetry Space Group F 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.93 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 30 94 0.059 14.9 3.4 154579 -3 17.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.66 96 0.41 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.6 15 154324 7744 93.54 0.144 0.144 0.142 0.1556 0.169 0.1835 RANDOM 16.61
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 -0.01 -0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.457 r_dihedral_angle_3_deg 12.3 r_dihedral_angle_4_deg 10.71 r_dihedral_angle_1_deg 6.995 r_scangle_it 6.129 r_scbond_it 4.732 r_mcangle_it 2.942 r_mcbond_it 2.578 r_angle_refined_deg 1.543 r_angle_other_deg 0.916
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.457 r_dihedral_angle_3_deg 12.3 r_dihedral_angle_4_deg 10.71 r_dihedral_angle_1_deg 6.995 r_scangle_it 6.129 r_scbond_it 4.732 r_mcangle_it 2.942 r_mcbond_it 2.578 r_angle_refined_deg 1.543 r_angle_other_deg 0.916 r_mcbond_other 0.674 r_symmetry_vdw_other 0.26 r_symmetry_vdw_refined 0.249 r_nbd_refined 0.208 r_symmetry_hbond_refined 0.206 r_nbd_other 0.202 r_xyhbond_nbd_refined 0.17 r_xyhbond_nbd_other 0.149 r_nbtor_other 0.1 r_chiral_restr 0.098 r_bond_refined_d 0.013 r_bond_other_d 0.002 r_gen_planes_refined 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7350 Nucleic Acid Atoms Solvent Atoms 1284 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction SCALEPACK data scaling