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Crystal structure of the Schiff base intermediate in the reductive half-reaction of aromatic amine dehydrogenase (AADH) with tryptamine. Monoclinic form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 292 PEG 2000 MME, ammonium sulphate, sodium cacodylate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.4 46.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.703 α = 90 b = 88.373 β = 90.19 c = 79.709 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.93 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 15 92 0.061 11.1 2.6 357148 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.14 82 0.51 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.1 15 357148 18936 100 0.144 0.144 0.144 0.163 0.2076 RANDOM 18.672
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 -0.49 -0.4 0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.149 r_dihedral_angle_3_deg 11.24 r_dihedral_angle_4_deg 11.071 r_dihedral_angle_1_deg 7.491 r_sphericity_free 7.473 r_sphericity_bonded 5.954 r_scangle_it 3.458 r_scbond_it 2.684 r_mcangle_it 1.949 r_mcbond_it 1.525
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.149 r_dihedral_angle_3_deg 11.24 r_dihedral_angle_4_deg 11.071 r_dihedral_angle_1_deg 7.491 r_sphericity_free 7.473 r_sphericity_bonded 5.954 r_scangle_it 3.458 r_scbond_it 2.684 r_mcangle_it 1.949 r_mcbond_it 1.525 r_rigid_bond_restr 1.398 r_angle_refined_deg 1.29 r_mcbond_other 1.052 r_angle_other_deg 0.707 r_symmetry_vdw_other 0.25 r_nbd_other 0.206 r_nbd_refined 0.205 r_symmetry_hbond_refined 0.191 r_xyhbond_nbd_refined 0.157 r_symmetry_vdw_refined 0.156 r_xyhbond_nbd_other 0.107 r_nbtor_other 0.105 r_chiral_restr 0.093 r_bond_refined_d 0.013 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7245 Nucleic Acid Atoms Solvent Atoms 1512 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction SCALEPACK data scaling