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Crystal structure of tryptamine-reduced aromatic amine dehydrogenase (AADH) from Alcaligenes faecalis in complex with tryptamine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 292 PEG 2000 MME, ammonium sulphate, sodium cacodylate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.4 47.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.998 α = 90 b = 88.749 β = 89.99 c = 81.149 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.93 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 30 96 0.069 19.3 3.2 170610 -3 14.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.45 1.5 97 0.419 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.45 15 169892 8492 95.64 0.165 0.165 0.163 0.165 0.195 0.1966 RANDOM 15.105
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.8 -0.52 0.02 0.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.15 r_dihedral_angle_4_deg 12.25 r_dihedral_angle_3_deg 11.565 r_dihedral_angle_1_deg 7.067 r_scangle_it 5.077 r_scbond_it 4.056 r_mcangle_it 2.529 r_mcbond_it 2.218 r_angle_refined_deg 1.503 r_angle_other_deg 0.862
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.15 r_dihedral_angle_4_deg 12.25 r_dihedral_angle_3_deg 11.565 r_dihedral_angle_1_deg 7.067 r_scangle_it 5.077 r_scbond_it 4.056 r_mcangle_it 2.529 r_mcbond_it 2.218 r_angle_refined_deg 1.503 r_angle_other_deg 0.862 r_mcbond_other 0.643 r_nbd_refined 0.203 r_nbd_other 0.197 r_symmetry_hbond_refined 0.196 r_symmetry_vdw_other 0.194 r_xyhbond_nbd_refined 0.145 r_symmetry_vdw_refined 0.135 r_nbtor_other 0.096 r_chiral_restr 0.095 r_xyhbond_nbd_other 0.087 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7371 Nucleic Acid Atoms Solvent Atoms 1208 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction SCALEPACK data scaling