☰ Navigation Tabs
Glutaryl 7-Aminocephalosporanic Acid Acylase: mutational study of activation mechanism
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 295 PEG 8000, Tris, magnesium chloride, cacodylate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.4 63.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.736 α = 90 b = 73.736 β = 90 c = 383.349 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-05-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 4A 0.95 PAL/PLS 4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 95.35 90.5 0.095 5.7 57515
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 81 0.453 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.24 50 48502 2472 92.46 0.175 0.173 0.209 RANDOM 23.787
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.78 0.78 -1.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.018 r_scangle_it 2.412 r_sphericity_free 2.396 r_scbond_it 1.472 r_angle_refined_deg 1.231 r_mcangle_it 1.103 r_sphericity_bonded 0.95 r_rigid_bond_restr 0.833 r_angle_other_deg 0.827 r_mcbond_it 0.616
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.018 r_scangle_it 2.412 r_sphericity_free 2.396 r_scbond_it 1.472 r_angle_refined_deg 1.231 r_mcangle_it 1.103 r_sphericity_bonded 0.95 r_rigid_bond_restr 0.833 r_angle_other_deg 0.827 r_mcbond_it 0.616 r_symmetry_vdw_other 0.261 r_nbd_other 0.238 r_nbd_refined 0.201 r_xyhbond_nbd_refined 0.129 r_symmetry_vdw_refined 0.096 r_nbtor_other 0.081 r_chiral_restr 0.076 r_symmetry_hbond_refined 0.058 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5363 Nucleic Acid Atoms Solvent Atoms 382 Heterogen Atoms 11
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling CNS refinement REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction CNS phasing