☰ Navigation Tabs
Crystal Structures Of Glutaryl 7-Aminocephalosporanic Acid Acylase: mutational study of activation mechanism
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 295 PEG 3350, Tris, magnesium chloride, cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.4 63.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.775 α = 90 b = 73.775 β = 90 c = 384.646 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-05-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 4A 0.95 PAL/PLS 4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.24 50 94.5 0.08 52570 49679
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.24 2.29 87.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.244 48.22 47044 2544 94.57 0.1848 0.18344 0.21035 RANDOM 31.343
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.52 0.52 -1.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.091 r_sphericity_free 2.591 r_scangle_it 2.474 r_scbond_it 1.504 r_angle_refined_deg 1.264 r_mcangle_it 1.138 r_sphericity_bonded 1.006 r_rigid_bond_restr 0.861 r_angle_other_deg 0.837 r_mcbond_it 0.639
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.091 r_sphericity_free 2.591 r_scangle_it 2.474 r_scbond_it 1.504 r_angle_refined_deg 1.264 r_mcangle_it 1.138 r_sphericity_bonded 1.006 r_rigid_bond_restr 0.861 r_angle_other_deg 0.837 r_mcbond_it 0.639 r_symmetry_vdw_refined 0.29 r_symmetry_vdw_other 0.28 r_nbd_other 0.24 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.132 r_symmetry_hbond_refined 0.11 r_nbtor_other 0.083 r_chiral_restr 0.079 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5372 Nucleic Acid Atoms Solvent Atoms 374 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling CNS refinement REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction CNS phasing