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Crystal structure of Adenosine Phosphorylase from Bacillus cereus with adenosine bound in the active site
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 Ammonium sulfate, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.84 56.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122 α = 90 b = 122 β = 90 c = 68 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD ADSC QUANTUM 4 2004-03-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9756 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 15
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 15 60173 3216 100 0.17835 0.17706 0.1806 0.20223 0.1801 RANDOM 14.758
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.01 -0.02 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.047 r_dihedral_angle_3_deg 13.716 r_dihedral_angle_4_deg 10.21 r_dihedral_angle_1_deg 6.146 r_scangle_it 3.431 r_scbond_it 2.189 r_mcangle_it 1.314 r_angle_refined_deg 1.292 r_mcbond_it 0.857 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.047 r_dihedral_angle_3_deg 13.716 r_dihedral_angle_4_deg 10.21 r_dihedral_angle_1_deg 6.146 r_scangle_it 3.431 r_scbond_it 2.189 r_mcangle_it 1.314 r_angle_refined_deg 1.292 r_mcbond_it 0.857 r_nbtor_refined 0.313 r_nbd_refined 0.228 r_symmetry_vdw_refined 0.228 r_symmetry_hbond_refined 0.166 r_xyhbond_nbd_refined 0.155 r_chiral_restr 0.085 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3355 Nucleic Acid Atoms Solvent Atoms 472 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement DENZO data reduction XDS data scaling CNS phasing