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X-Ray Structure of Gene Product from Homo Sapiens HS.95870
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4 293 10 MG/ML PROTEIN, 2.1 M AMMONIUM SULFATE,
0.100 M SODIUM SUCCINATE, vapor diffusion, hanging drop, temperature 293K, pH 4.00
Crystal Properties Matthews coefficient Solvent content 2.2 44.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.912 α = 90 b = 57.731 β = 90 c = 89.195 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD HORIZONTAL SAGITALLY FOCUSING 2ND BENT MONOCHROMATOR CRYSTAL, VERTICAL BENT FOCUSING MIRROR 2005-03-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 99.1 0.106 10.348 7.4 7727
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.66 91.6 0.363 2.748 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.59 48.45 7175 408 97.5 0.197 0.193 0.1916 0.257 0.256 RANDOM 17.05
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.44 0.81 -0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.103 r_dihedral_angle_3_deg 18.303 r_dihedral_angle_4_deg 17.425 r_dihedral_angle_1_deg 7.283 r_scangle_it 2.853 r_scbond_it 1.832 r_angle_refined_deg 1.644 r_mcangle_it 1.12 r_mcbond_it 0.649 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.103 r_dihedral_angle_3_deg 18.303 r_dihedral_angle_4_deg 17.425 r_dihedral_angle_1_deg 7.283 r_scangle_it 2.853 r_scbond_it 1.832 r_angle_refined_deg 1.644 r_mcangle_it 1.12 r_mcbond_it 0.649 r_nbtor_refined 0.308 r_nbd_refined 0.225 r_xyhbond_nbd_refined 0.209 r_symmetry_vdw_refined 0.173 r_symmetry_hbond_refined 0.151 r_chiral_restr 0.099 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1784 Nucleic Acid Atoms Solvent Atoms 104 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling CNS phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction PHENIX phasing