☰ Navigation Tabs
Crystal structure of a putative glycosidase (tm1410) from thermotoga maritima at 2.20 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 9.5 277 25.0% PEG-300, 10.0% Glycerol, 5.0% PEG-8000, 0.1M CHES pH 9.5 , VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 6.43 80.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 194.93 α = 90 b = 84.62 β = 119.9 c = 195.01 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 flat mirror 2005-05-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.979170, 0.918370 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 28.59 90.2 0.093 8.15 263407
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28 61.1 0.543 1.97
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.2 28.59 263407 14007 99.39 0.217 0.216 0.2261 0.239 0.2452 RANDOM 37.156
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.33 -1.13 0.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.178 r_dihedral_angle_4_deg 16.337 r_dihedral_angle_3_deg 13.906 r_dihedral_angle_1_deg 6.681 r_scangle_it 2.664 r_scbond_it 1.927 r_angle_refined_deg 1.529 r_mcangle_it 1.289 r_mcbond_it 0.984 r_angle_other_deg 0.983
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.178 r_dihedral_angle_4_deg 16.337 r_dihedral_angle_3_deg 13.906 r_dihedral_angle_1_deg 6.681 r_scangle_it 2.664 r_scbond_it 1.927 r_angle_refined_deg 1.529 r_mcangle_it 1.289 r_mcbond_it 0.984 r_angle_other_deg 0.983 r_mcbond_other 0.293 r_symmetry_hbond_refined 0.241 r_xyhbond_nbd_refined 0.204 r_nbd_refined 0.196 r_nbtor_refined 0.187 r_symmetry_vdw_other 0.179 r_nbd_other 0.173 r_symmetry_vdw_refined 0.123 r_chiral_restr 0.095 r_nbtor_other 0.086 r_xyhbond_nbd_other 0.078 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14182 Nucleic Acid Atoms Solvent Atoms 926 Heterogen Atoms 324
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELX phasing SHARP phasing