2A9X

TAR RNA recognition by a cyclic peptidomimetic of Tat protein


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY0.8 mM BIV-2 peptide plus unlabeled 0.8 mM BIV TAR RNA20 mM Sodium Acetate, D3, pH 5.0, 100% D2O20 mM Na+51 atm298
22D NOESY0.8 mM BIV-2 peptide plus unlabeled 0.8 mM BIV TAR RNA20 mM Sodium Acetate, D3, pH 5.0, 100% D2O20 mM Na+51 atm275
3HCCH-COSY0.8 mM BIV-2 peptide plus unlabeled 0.8 mM BIV TAR RNA20 mM Sodium Acetate, D3, pH 5.0, 90% H2O, 10% D2O20 mM Na+51 atm298
4HCCH-TOCSY0.8 mM BIV-2 peptide plus unlabeled 0.8 mM BIV TAR RNA20 mM Sodium Acetate, D3, pH 5.0, 90% H2O, 10% D2O20 mM Na+51 atm298
5HNN-COSY0.8 mM BIV-2 peptide plus unlabeled 0.8 mM BIV TAR RNA20 mM Sodium Acetate, D3, pH 5.0, 90% H2O, 10% D2O20 mM Na+51 atm275
6F1fF2f-type 2D TOCSY0.8 mM BIV-2 peptide plus unlabeled 0.8 mM BIV TAR RNA20 mM Sodium Acetate, D3, pH 5.0, 90% H2O, 10% D2O20 mM Na+51 atm298
7F1fF2f-type 2D NOESY0.8 mM BIV-2 peptide plus unlabeled 0.8 mM BIV TAR RNA20 mM Sodium Acetate, D3, pH 5.0, 90% H2O, 10% D2O20 mM Na+51 atm298
8F1fF2f-type 2D NOESY0.8 mM BIV-2 peptide plus unlabeled 0.8 mM BIV TAR RNA20 mM Sodium Acetate, D3, pH 5.0, 90% H2O, 10% D2O20 mM Na+51 atm275
93D 31P HETCOR etc0.8 mM BIV-2 peptide plus unlabeled 0.8 mM BIV TAR RNA20 mM Sodium Acetate, D3, pH 5.0, 90% H2O, 10% D2O20 mM Na+51 atm298
10IPAP-HSQC0.8 mM BIV-2 peptide plus unlabeled 0.8 mM BIV TAR RNA20 mM Sodium Acetate, D3, pH 5.0, 90% H2O, 10% D2O20 mM Na+51 atm298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX500
2BrukerDMX750
NMR Refinement
MethodDetailsSoftware
Torsion Angle Molecular DynamicsXwinNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number100
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXwinNMR3.0Bruker
2processingNMRPipe2.3Delaglio et al
3structure solutionX-PLOR2.9Schwieters et al
4data analysisSparky3.110Goddard and Kneller
5refinementX-PLOR2.9Schwieters et al