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Molecular Structure of the Interleukin-1 Receptor-Associated Kinase-4 Death Domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 281 100mM HEPES pH 7.5, 25% PEG 3350, 10 mM MnCl2 , VAPOR DIFFUSION, HANGING DROP, temperature 281K
Crystal Properties Matthews coefficient Solvent content 2.53 51.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.152 α = 90 b = 38.043 β = 121.07 c = 51.588 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD MARRESEARCH 2004-10-29 M SINGLE WAVELENGTH 2 1 x-ray CCD MARRESEARCH M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 0.97888 APS 14-ID-B 2 SYNCHROTRON APS BEAMLINE 32-ID 0.91947, 0.91919, 0.91270 APS 32-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.7 18 13974
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 18 12981 993 100 0.17982 0.17673 0.1868 0.22255 0.186 RANDOM 28.903
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 -0.62 0.68 -1.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.744 r_dihedral_angle_4_deg 16.909 r_dihedral_angle_3_deg 12.286 r_dihedral_angle_1_deg 7.303 r_scangle_it 5.151 r_scbond_it 3.35 r_mcangle_it 1.968 r_angle_refined_deg 1.719 r_mcbond_it 1.245 r_nbtor_refined 0.323
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.744 r_dihedral_angle_4_deg 16.909 r_dihedral_angle_3_deg 12.286 r_dihedral_angle_1_deg 7.303 r_scangle_it 5.151 r_scbond_it 3.35 r_mcangle_it 1.968 r_angle_refined_deg 1.719 r_mcbond_it 1.245 r_nbtor_refined 0.323 r_nbd_refined 0.28 r_xyhbond_nbd_refined 0.261 r_symmetry_vdw_refined 0.222 r_symmetry_hbond_refined 0.22 r_chiral_restr 0.106 r_bond_refined_d 0.017 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 823 Nucleic Acid Atoms Solvent Atoms 145 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement