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Crystal structure of catalytic domain of TACE with Thiomorpholine Sulfonamide Hydroxamate inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BKC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.4 292 PEG 4000, isopropanol, NaCitrate, pH 5.4, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.2 42.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.367 α = 90 b = 59.209 β = 90 c = 198.011 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2000-01-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 1.0 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 20 99.14 0.057 31848 31529 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.299 2.358 96.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1BKC 2.3 20 24841 24593 1313 99.14 0.2179 0.21794 0.21454 0.2166 0.28058 0.2784 RANDOM 32.205
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.79 -0.7 -1.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.576 r_dihedral_angle_4_deg 21.233 r_dihedral_angle_3_deg 16.855 r_dihedral_angle_1_deg 6.419 r_scangle_it 2.759 r_scbond_it 1.793 r_angle_refined_deg 1.523 r_mcangle_it 1.388 r_mcbond_it 0.861 r_symmetry_hbond_refined 0.326
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.576 r_dihedral_angle_4_deg 21.233 r_dihedral_angle_3_deg 16.855 r_dihedral_angle_1_deg 6.419 r_scangle_it 2.759 r_scbond_it 1.793 r_angle_refined_deg 1.523 r_mcangle_it 1.388 r_mcbond_it 0.861 r_symmetry_hbond_refined 0.326 r_nbtor_refined 0.304 r_nbd_refined 0.216 r_symmetry_vdw_refined 0.175 r_xyhbond_nbd_refined 0.156 r_chiral_restr 0.141 r_metal_ion_refined 0.116 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4094 Nucleic Acid Atoms Solvent Atoms 147 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing