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The crystal structure of transcriptional regulator Tm0710 from Thermotoga maritima
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 297 0.2M Mg Acetate, 0.1M Na Cacodylate pH 6.5, 20% PEG8K, VAPOR DIFFUSION, HANGING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.5 49.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.29 α = 90 b = 50.38 β = 96.89 c = 127.56 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2005-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97932 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 100 40215 40215
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.85 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 20 40215 40215 2145 100 0.21282 0.21282 0.2097 0.27052 0.2623 RANDOM 28.757
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.67 -0.47 -2.18 -0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.579 r_dihedral_angle_4_deg 19.703 r_dihedral_angle_3_deg 15.452 r_dihedral_angle_1_deg 4.896 r_scangle_it 4.385 r_scbond_it 2.809 r_mcangle_it 1.647 r_angle_refined_deg 1.392 r_mcbond_it 1.098 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.579 r_dihedral_angle_4_deg 19.703 r_dihedral_angle_3_deg 15.452 r_dihedral_angle_1_deg 4.896 r_scangle_it 4.385 r_scbond_it 2.809 r_mcangle_it 1.647 r_angle_refined_deg 1.392 r_mcbond_it 1.098 r_nbtor_refined 0.3 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.2 r_symmetry_hbond_refined 0.188 r_symmetry_vdw_refined 0.164 r_chiral_restr 0.096 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4629 Nucleic Acid Atoms Solvent Atoms 412 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASES phasing