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Ternary complex of the WH2 Domain of WIP with Actin-DNAse I
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ATN PDB ENTRY 1atn
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 sodium formate, PEG3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.39 48.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.8 α = 90 b = 77.07 β = 90 c = 222.29 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 45.08 96.1 0.081 21.8 5.8 22916 21267
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 85.4 0.302 5 4.4 1891
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1atn 2.6 45.08 2 22064 20180 1087 92.8 0.16343 0.16049 0.1616 0.219 0.2179 RANDOM 34.779
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.1 -0.49 0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.867 r_dihedral_angle_4_deg 23.149 r_dihedral_angle_3_deg 18.62 r_dihedral_angle_1_deg 6.208 r_mcangle_it 1.526 r_scangle_it 1.465 r_angle_refined_deg 1.373 r_scbond_it 0.915 r_mcbond_it 0.904 r_nbtor_refined 0.331
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.867 r_dihedral_angle_4_deg 23.149 r_dihedral_angle_3_deg 18.62 r_dihedral_angle_1_deg 6.208 r_mcangle_it 1.526 r_scangle_it 1.465 r_angle_refined_deg 1.373 r_scbond_it 0.915 r_mcbond_it 0.904 r_nbtor_refined 0.331 r_symmetry_vdw_refined 0.284 r_nbd_refined 0.233 r_symmetry_hbond_refined 0.206 r_xyhbond_nbd_refined 0.199 r_metal_ion_refined 0.134 r_chiral_restr 0.088 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5200 Nucleic Acid Atoms Solvent Atoms 208 Heterogen Atoms 76
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing