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CRYSTAL STRUCTURE OF a putativeTenA family transcriptional regulator (BT_3146) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 2.16 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 5 273 1.0M LiCl, 10.0% PEG-6000, 0.1M Citrate pH5.0 , VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 4.08 69.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 201.238 α = 90 b = 201.238 β = 90 c = 291.03 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror, double crystal monochromator, toroid 2005-04-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97934, 0.89194 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.16 48.85 95.6 0.09 0.09 6.9 7.3 175804
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.16 2.28 90.2 0.43 0.43 1.8 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.16 48.85 166931 8818 95.27 0.146 0.145 0.1549 0.173 0.1807 RANDOM 34.196
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.01 0.02 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.808 r_dihedral_angle_4_deg 16.467 r_dihedral_angle_3_deg 12.589 r_scangle_it 7.472 r_scbond_it 5.09 r_dihedral_angle_1_deg 4.814 r_mcangle_it 2.837 r_angle_refined_deg 1.427 r_mcbond_it 1.388 r_angle_other_deg 0.917
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.808 r_dihedral_angle_4_deg 16.467 r_dihedral_angle_3_deg 12.589 r_scangle_it 7.472 r_scbond_it 5.09 r_dihedral_angle_1_deg 4.814 r_mcangle_it 2.837 r_angle_refined_deg 1.427 r_mcbond_it 1.388 r_angle_other_deg 0.917 r_mcbond_other 0.259 r_symmetry_vdw_other 0.233 r_symmetry_vdw_refined 0.228 r_nbd_refined 0.226 r_symmetry_hbond_refined 0.215 r_nbtor_refined 0.195 r_nbd_other 0.179 r_xyhbond_nbd_refined 0.164 r_nbtor_other 0.088 r_chiral_restr 0.086 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12898 Nucleic Acid Atoms Solvent Atoms 1715 Heterogen Atoms 120
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction XDS data reduction CCP4 data scaling SHELXD phasing autoSHARP phasing