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Human phytanoyl-coa 2-hydroxylase in complex with iron and 2-oxoglutarate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.1 293 20% PEG 3350, 0.3 M tri-ammonium citrate, pH 7.1, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.1 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.929 α = 90 b = 86.677 β = 90 c = 97.541 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-02-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX10.1 0.9800 SRS PX10.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30.44 94.2 0.119 0.13 13.5 5.3 9583 9583 51
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 97.2 2 5.2 1448
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 30.44 9110 9110 472 93.05 0.20772 0.20772 0.20425 0.27428 0.2867 RANDOM 35.234
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.69 3.4 -1.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.286 r_dihedral_angle_4_deg 20.882 r_dihedral_angle_3_deg 16.544 r_dihedral_angle_1_deg 7.634 r_scangle_it 5.662 r_scbond_it 4.263 r_mcangle_it 2.389 r_mcbond_it 1.446 r_angle_refined_deg 1.36 r_angle_other_deg 0.811
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.286 r_dihedral_angle_4_deg 20.882 r_dihedral_angle_3_deg 16.544 r_dihedral_angle_1_deg 7.634 r_scangle_it 5.662 r_scbond_it 4.263 r_mcangle_it 2.389 r_mcbond_it 1.446 r_angle_refined_deg 1.36 r_angle_other_deg 0.811 r_mcbond_other 0.307 r_nbd_refined 0.208 r_nbd_other 0.179 r_nbtor_refined 0.177 r_symmetry_vdw_other 0.152 r_xyhbond_nbd_refined 0.132 r_symmetry_vdw_refined 0.099 r_nbtor_other 0.083 r_chiral_restr 0.079 r_symmetry_hbond_refined 0.021 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1961 Nucleic Acid Atoms Solvent Atoms 15 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SHELXS phasing