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KAT8 MUTANT (KAT6A SURROGATE, MYST-CRYST) IN COMPLEX WITH KAT6A INHIBITOR Example-41
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6BA4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 PEG, HEPES
Crystal Properties Matthews coefficient Solvent content 2.5 50.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.456 α = 90 b = 57.724 β = 90 c = 121.17 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2019-06-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.0332 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 46.46 97.7 0.056 0.064 0.998 11.5 4.4 79136 22.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.38 96.1 0.827 0.943 0.605 1.3 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.3 43.377 79136 2101 97.707 0.125 0.1243 0.1399 0.1608 0.1704 23.929
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.257 -0.567 0.823
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.98 r_dihedral_angle_4_deg 18.179 r_dihedral_angle_3_deg 14.149 r_scangle_it 7.744 r_scangle_other 7.743 r_lrange_it 7.104 r_lrange_other 7.033 r_scbond_it 6.76 r_scbond_other 6.758 r_dihedral_angle_1_deg 6.606
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.98 r_dihedral_angle_4_deg 18.179 r_dihedral_angle_3_deg 14.149 r_scangle_it 7.744 r_scangle_other 7.743 r_lrange_it 7.104 r_lrange_other 7.033 r_scbond_it 6.76 r_scbond_other 6.758 r_dihedral_angle_1_deg 6.606 r_mcangle_it 5.46 r_mcangle_other 5.458 r_rigid_bond_restr 5.261 r_mcbond_it 4.725 r_mcbond_other 4.713 r_angle_refined_deg 1.832 r_angle_other_deg 1.471 r_symmetry_xyhbond_nbd_refined 0.284 r_symmetry_xyhbond_nbd_other 0.231 r_nbd_refined 0.223 r_xyhbond_nbd_refined 0.193 r_nbd_other 0.19 r_nbtor_refined 0.187 r_symmetry_nbd_other 0.184 r_symmetry_nbd_refined 0.152 r_chiral_restr 0.118 r_symmetry_nbtor_other 0.085 r_xyhbond_nbd_other 0.076 r_bond_refined_d 0.016 r_gen_planes_refined 0.013 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2218 Nucleic Acid Atoms Solvent Atoms 333 Heterogen Atoms 66
Software Software Software Name Purpose REFMAC refinement XDS data reduction pointless data scaling PHASER phasing