☰ Navigation Tabs
KAT6A SURFACE MUTANT IN COMPLEX WITH QUINOLINE INHIBITOR COMPOUND-1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2OZU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 PEG 3350, sodium acetate, HEPES; glycerol as cryo protectant
Crystal Properties Matthews coefficient Solvent content 2.14 42.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.033 α = 93.02 b = 58.91 β = 91.25 c = 64.925 γ = 102.89
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2018-09-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.0332 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 44.25 94.1 0.137 0.194 0.975 6.7 1.8 13855 49.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.86 94.6 0.598 0.58 0.58 1.44
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 34.19 12969 432 91.4 0.23738 0.2351 0.2384 0.3094 0.3102 RANDOM 68.095
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.97 0.54 -1.22 2.68 1.95 -5.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.784 r_dihedral_angle_4_deg 21.129 r_dihedral_angle_3_deg 19.536 r_dihedral_angle_1_deg 7.577 r_long_range_B_refined 6.931 r_long_range_B_other 6.926 r_scangle_other 3.866 r_scbond_other 2.909 r_scbond_it 2.902 r_angle_refined_deg 1.869
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.784 r_dihedral_angle_4_deg 21.129 r_dihedral_angle_3_deg 19.536 r_dihedral_angle_1_deg 7.577 r_long_range_B_refined 6.931 r_long_range_B_other 6.926 r_scangle_other 3.866 r_scbond_other 2.909 r_scbond_it 2.902 r_angle_refined_deg 1.869 r_mcangle_it 1.592 r_mcangle_other 1.592 r_angle_other_deg 1.089 r_mcbond_it 0.905 r_mcbond_other 0.905 r_chiral_restr 0.105 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4512 Nucleic Acid Atoms Solvent Atoms 37 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement pointless data scaling XDS data reduction PHASER phasing PDB_EXTRACT data extraction