☰ Navigation Tabs
KAT8 MUTANT (KAT6A SURROGATE, MYST-CRYST) IN COMPLEX WITH KAT6A INHIBITOR BAY-7728
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6BA4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 PEG, HEPES
Crystal Properties Matthews coefficient Solvent content 2.52 51.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.15 α = 90 b = 59.169 β = 90 c = 119.93 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2019-06-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.0332 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 43.07 98.8 0.075 0.085 0.999 12.7 4.4 36622 30.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.8 96.7 0.907 1.029 0.695 1.5 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 43.07 36621 1831 98.815 0.179 0.1775 0.1888 0.214 0.2277 33.195
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.661 -0.125 0.786
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.765 r_dihedral_angle_4_deg 17.372 r_dihedral_angle_3_deg 14.946 r_lrange_other 10.093 r_lrange_it 10.091 r_dihedral_angle_1_deg 7 r_scangle_it 6.373 r_scangle_other 6.371 r_mcangle_it 4.348 r_mcangle_other 4.348
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.765 r_dihedral_angle_4_deg 17.372 r_dihedral_angle_3_deg 14.946 r_lrange_other 10.093 r_lrange_it 10.091 r_dihedral_angle_1_deg 7 r_scangle_it 6.373 r_scangle_other 6.371 r_mcangle_it 4.348 r_mcangle_other 4.348 r_scbond_it 4.32 r_scbond_other 4.318 r_mcbond_it 2.852 r_mcbond_other 2.85 r_angle_refined_deg 1.832 r_angle_other_deg 1.427 r_nbd_refined 0.222 r_symmetry_xyhbond_nbd_refined 0.215 r_symmetry_nbd_other 0.183 r_nbtor_refined 0.182 r_nbd_other 0.177 r_xyhbond_nbd_refined 0.174 r_symmetry_nbd_refined 0.144 r_chiral_restr 0.104 r_symmetry_nbtor_other 0.084 r_bond_refined_d 0.014 r_gen_planes_refined 0.012 r_xyhbond_nbd_other 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2253 Nucleic Acid Atoms Solvent Atoms 302 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement XDS data reduction pointless data scaling PHASER phasing