29NX | pdb_000029nx

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	193L

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	4	293	20% ethylene glycol, 0.1 M sodium acetate at pH 4.0, and 0.6 M sodium nitrate

Crystal Properties
Matthews coefficient	Solvent content
1.97	37.52

Symmetry
Space Group	P 43 21 2

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2022-06-17	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ELETTRA BEAMLINE 11.2C	1	ELETTRA	11.2C

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.3	54.822	99.9	1	31.5	12.9		28706

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.3	1.32			0.775

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Free (Depositor)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.3	54.822	28706	1364	99.889	0.2	0.1991	0.2267	RANDOM	22.865

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.014			-0.014		0.028

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	15.616
r_dihedral_angle_6_deg	13.864
r_dihedral_angle_2_deg	8.806
r_lrange_it	6.843
r_lrange_other	6.7
r_dihedral_angle_1_deg	6.362
r_scangle_other	4.975
r_scangle_it	4.966
r_scbond_it	3.294
r_scbond_other	3.186

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	15.616
r_dihedral_angle_6_deg	13.864
r_dihedral_angle_2_deg	8.806
r_lrange_it	6.843
r_lrange_other	6.7
r_dihedral_angle_1_deg	6.362
r_scangle_other	4.975
r_scangle_it	4.966
r_scbond_it	3.294
r_scbond_other	3.186
r_mcangle_other	3.03
r_mcangle_it	3.024
r_mcbond_it	2.121
r_mcbond_other	2.109
r_angle_refined_deg	2.068
r_angle_other_deg	0.672
r_symmetry_nbd_refined	0.272
r_nbd_refined	0.259
r_xyhbond_nbd_refined	0.23
r_nbd_other	0.21
r_symmetry_nbd_other	0.198
r_nbtor_refined	0.183
r_symmetry_xyhbond_nbd_refined	0.173
r_chiral_restr	0.107
r_metal_ion_refined	0.102
r_symmetry_nbtor_other	0.084
r_bond_refined_d	0.011
r_gen_planes_refined	0.01
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1001
Nucleic Acid Atoms
Solvent Atoms	103
Heterogen Atoms	109

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.