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A CONTINOUS TRANSITION FROM A-DNA TO B-DNA IN THE 1:1 COMPLEX BETWEEN NOGALAMYCIN AND THE HEXAMER DCCCGGG
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1D12 PARTS FROM DIFFERENT SOURCES: E.G. DDF001, DDF019 experimental model PDB 1D11 PARTS FROM DIFFERENT SOURCES: E.G. DDF001, DDF019
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 pH 6.50, VAPOR DIFFUSION, SITTING DROP, temperature 277.00K
Crystal Properties Matthews coefficient Solvent content 3.1 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.845 α = 90 b = 45.845 β = 90 c = 58.075 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 277 IMAGE PLATE MARRESEARCH MULTILAYER MIRROR 1994-01-01 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LURE BEAMLINE DW32 LURE DW32
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 25 80 0.052 0.072 19 4.2 2492 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.5 45 0.18 3 2.5
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PARTS FROM DIFFERENT SOURCES: E.G. DDF001, DDF019 2.4 18 2 2365 92 0.183 25.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation n_multtor_nbd 0.23 n_xhyhbond_nbd 0.18 n_chiral_restr 0.17 n_singtor_nbd 0.08 n_plane_restr 0.036 n_phos_bond_angle_d 0.033 n_angle_d 0.023 n_bond_d 0.011 n_phos_bond_d 0.011 n_planar_d
RMS Deviations Key Refinement Restraint Deviation n_multtor_nbd 0.23 n_xhyhbond_nbd 0.18 n_chiral_restr 0.17 n_singtor_nbd 0.08 n_plane_restr 0.036 n_phos_bond_angle_d 0.033 n_angle_d 0.023 n_bond_d 0.011 n_phos_bond_d 0.011 n_planar_d n_hb_or_metal_coord n_sugar_bond_it n_sugar_angle_it n_phos_bond_it n_phos_angle_it n_bond_angle_restr n_dihedral_angle_restr n_impr_tor n_sugar_bond_d n_sugar_bond_angle_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 240 Solvent Atoms 47 Heterogen Atoms 56
Software Software Software Name Purpose AMoRE phasing NUCLSQ refinement MOSFLM data reduction CCP4 data reduction SCALF data scaling