☰ Navigation Tabs
X-ray crystal structure of human NBS1 FHA-BRCT1-BRCT2 domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 277 Tris (base), Bicine (pH 8.3), sodium nitrate, dibasic sodium phosphate, ammonium sulfate, ethylene glycol, and PEG 8,000
Crystal Properties Matthews coefficient Solvent content 3.32 62.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.26 α = 90 b = 115.168 β = 104.655 c = 124.581 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2020-02-10 M SINGLE WAVELENGTH 2 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-12-09 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 1.0 Photon Factory BL-5A 2 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 0.97922 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 48.3 100 0.998 14.2 6.9 65469
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.56 0.674
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 2.5 48.293 65445 3290 99.947 0.196 0.1936 0.1998 0.2366 0.2382 51.268
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.358 0.54 -0.209 -0.379
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.278 r_dihedral_angle_6_deg 14.841 r_lrange_it 11.178 r_lrange_other 11.177 r_scangle_it 9.097 r_scangle_other 9.097 r_dihedral_angle_2_deg 8.455 r_mcangle_it 7.649 r_mcangle_other 7.649 r_dihedral_angle_1_deg 6.787
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.278 r_dihedral_angle_6_deg 14.841 r_lrange_it 11.178 r_lrange_other 11.177 r_scangle_it 9.097 r_scangle_other 9.097 r_dihedral_angle_2_deg 8.455 r_mcangle_it 7.649 r_mcangle_other 7.649 r_dihedral_angle_1_deg 6.787 r_scbond_it 6.185 r_scbond_other 6.185 r_mcbond_it 5.428 r_mcbond_other 5.426 r_angle_refined_deg 1.729 r_angle_other_deg 0.575 r_symmetry_xyhbond_nbd_refined 0.498 r_symmetry_nbd_refined 0.249 r_nbd_other 0.243 r_nbd_refined 0.216 r_symmetry_nbd_other 0.192 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.171 r_ncsr_local_group_4 0.105 r_ncsr_local_group_6 0.097 r_ncsr_local_group_1 0.091 r_ncsr_local_group_2 0.087 r_ncsr_local_group_5 0.087 r_ncsr_local_group_3 0.086 r_symmetry_nbtor_other 0.084 r_chiral_restr 0.082 r_symmetry_xyhbond_nbd_other 0.043 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9907 Nucleic Acid Atoms Solvent Atoms 422 Heterogen Atoms 69
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling CRANK2 phasing