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Subtomogram average of Apoferrtin (11x11) using CRYO ARM 300II
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 4.5405 f_angle_d 0.4758 f_chiral_restr 0.0361 f_plane_restr 0.0036 f_bond_d 0.0025
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SUBTOMOGRAM AVERAGING Number of Particles 154717 Reported Resolution (Å) 2.1 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry O
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 3.5
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model JEOL CRYO ARM 300 Minimum Defocus (nm) 2000 Maximum Defocus (nm) 3000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model JEOL CRYOSPECPORTER Nominal Magnification 50000 Calibrated Magnification 49505 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version VOLUME SELECTION RELION 5 MODEL REFINEMENT PHENIX CTF CORRECTION RELION 5 FINAL EULER ASSIGNMENT RELION 5 CLASSIFICATION RELION 5 RECONSTRUCTION RELION 5
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION