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Crystal structure of the catalytic domain of an adenosine deaminase that acts on RNA (hADAR2) bound to inositol hexakisphosphate (IHP)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.8 293 Bis-Tris, ammonium sulfate, PEG 3350, glycerol, pH 6.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.3 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.205 α = 90 b = 121.192 β = 90 c = 127.331 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2004-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 20 92.3 89796 82849 -2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.76 62.5
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR 1.7 20 89813 82731 4219 92.27 0.17461 0.17461 0.173 0.1722 0.206 0.1758 5% 19.71
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.46 -0.27 -0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.142 r_dihedral_angle_4_deg 18.876 r_dihedral_angle_3_deg 13.553 r_dihedral_angle_1_deg 5.74 r_scangle_it 3.651 r_scbond_it 2.409 r_mcangle_it 1.573 r_angle_refined_deg 1.48 r_mcbond_it 0.943 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.142 r_dihedral_angle_4_deg 18.876 r_dihedral_angle_3_deg 13.553 r_dihedral_angle_1_deg 5.74 r_scangle_it 3.651 r_scbond_it 2.409 r_mcangle_it 1.573 r_angle_refined_deg 1.48 r_mcbond_it 0.943 r_nbtor_refined 0.304 r_nbd_refined 0.208 r_symmetry_vdw_refined 0.194 r_xyhbond_nbd_refined 0.155 r_symmetry_hbond_refined 0.146 r_chiral_restr 0.098 r_metal_ion_refined 0.041 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5803 Nucleic Acid Atoms Solvent Atoms 669 Heterogen Atoms 79
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing