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Vinculin Head (0-258) in Complex with the Talin Rod residues 2345-2369
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1XWJ PDB ENTRY 1XWJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 100mM Tris, pH 7.0, 20% PEG 2000 MME, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.6 52.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.032 α = 90 b = 70.043 β = 90 c = 96.025 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 TOROIDAL ZERODUR MIRROR 2004-11-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 0.931 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 0.065 23.4 21165 21165
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.17 85.1 0.38 2.49
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1XWJ 2.1 20 21165 17769 981 88.8 0.25665 0.25454 0.2702 0.29468 0.3045 RANDOM 51.525
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.42 7.04 -5.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.926 r_dihedral_angle_3_deg 20.048 r_dihedral_angle_4_deg 17.847 r_dihedral_angle_1_deg 6.342 r_scangle_it 2.603 r_scbond_it 1.708 r_angle_refined_deg 1.54 r_mcangle_it 1.243 r_angle_other_deg 1.077 r_mcbond_it 1.059
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.926 r_dihedral_angle_3_deg 20.048 r_dihedral_angle_4_deg 17.847 r_dihedral_angle_1_deg 6.342 r_scangle_it 2.603 r_scbond_it 1.708 r_angle_refined_deg 1.54 r_mcangle_it 1.243 r_angle_other_deg 1.077 r_mcbond_it 1.059 r_symmetry_vdw_refined 0.27 r_symmetry_vdw_other 0.241 r_nbd_refined 0.228 r_chiral_restr 0.213 r_xyhbond_nbd_refined 0.197 r_symmetry_hbond_refined 0.185 r_nbd_other 0.179 r_nbtor_refined 0.174 r_mcbond_other 0.156 r_nbtor_other 0.091 r_xyhbond_nbd_other 0.031 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2093 Nucleic Acid Atoms Solvent Atoms 77 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling PHASER phasing