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Vinculin Head (0-258) in Complex with the Talin Rod Residue 820-844
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1XWJ PDB ENTRY 1XWJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.1 42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.013 α = 90 b = 52.164 β = 90 c = 153.841 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 TOROIDAL ZERODUR MIRROR 2005-03-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.934 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 97.7 0.078 16.1 27873
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.86 95.4 0.346 2.09
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1XWJ 1.8 26.29 27873 25784 1375 97.87 0.24095 0.23903 0.2672 0.27636 0.309 RANDOM 29.204
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 -0.35 0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.988 r_dihedral_angle_3_deg 15.467 r_dihedral_angle_4_deg 12.366 r_dihedral_angle_1_deg 5.315 r_angle_refined_deg 1.097 r_angle_other_deg 0.878 r_scangle_it 0.625 r_scbond_it 0.419 r_mcangle_it 0.28 r_mcbond_it 0.246
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.988 r_dihedral_angle_3_deg 15.467 r_dihedral_angle_4_deg 12.366 r_dihedral_angle_1_deg 5.315 r_angle_refined_deg 1.097 r_angle_other_deg 0.878 r_scangle_it 0.625 r_scbond_it 0.419 r_mcangle_it 0.28 r_mcbond_it 0.246 r_symmetry_vdw_other 0.229 r_nbd_refined 0.196 r_nbtor_refined 0.162 r_chiral_restr 0.157 r_nbd_other 0.156 r_symmetry_vdw_refined 0.096 r_nbtor_other 0.084 r_symmetry_hbond_refined 0.082 r_xyhbond_nbd_refined 0.081 r_mcbond_other 0.03 r_bond_refined_d 0.006 r_bond_other_d 0.002 r_gen_planes_refined 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2143 Nucleic Acid Atoms Solvent Atoms 251 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling PHASER phasing