☰ Navigation Tabs
Crystal structure of FtsY from Mycoplasma mycoides- space group H32
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ZU4 PDB CODE 1ZU4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 277 Sodium citrate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.32 63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 148.441 α = 90 b = 148.441 β = 90 c = 223.925 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2000-03-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.91 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 56 95 35370 35370
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.49 98.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB CODE 1ZU4 2.4 20 35370 33620 1750 94.83 0.2115 0.21156 0.2097 0.24642 0.2492 RANDOM 47.61
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.78 -0.39 -0.78 1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.701 r_dihedral_angle_4_deg 22.605 r_dihedral_angle_3_deg 17.822 r_dihedral_angle_1_deg 8.176 r_scangle_it 3.977 r_scbond_it 2.535 r_mcangle_it 1.823 r_angle_refined_deg 1.674 r_mcbond_it 1.347 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.701 r_dihedral_angle_4_deg 22.605 r_dihedral_angle_3_deg 17.822 r_dihedral_angle_1_deg 8.176 r_scangle_it 3.977 r_scbond_it 2.535 r_mcangle_it 1.823 r_angle_refined_deg 1.674 r_mcbond_it 1.347 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.24 r_nbd_refined 0.227 r_symmetry_hbond_refined 0.159 r_xyhbond_nbd_refined 0.147 r_chiral_restr 0.11 r_bond_refined_d 0.018 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4890 Nucleic Acid Atoms Solvent Atoms 139 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction CCP4 data scaling CNS phasing