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Crystal Structure of Bacillus cereus Metallo Protein from Glyoxalase family
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 295 0.1 M MES, 25% w/v PEG 8000, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.6 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.509 α = 90 b = 61.152 β = 110.91 c = 96.423 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH Mirror 2005-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 32-ID 0.99997 APS 32-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 25 99.7 0.071 21.8 7.4 47459 47459 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 99.1 0.343 5.9 6.6 4677
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.65 25 45056 2403 99.62 0.17769 0.17537 0.1775 0.22238 0.2223 RANDOM 29.33
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.24 -0.86 0.76 -1.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.509 r_dihedral_angle_4_deg 18.808 r_dihedral_angle_3_deg 13.52 r_dihedral_angle_1_deg 6.244 r_scangle_it 5.467 r_scbond_it 3.638 r_mcangle_it 2.329 r_mcbond_it 1.55 r_angle_refined_deg 1.475 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.509 r_dihedral_angle_4_deg 18.808 r_dihedral_angle_3_deg 13.52 r_dihedral_angle_1_deg 6.244 r_scangle_it 5.467 r_scbond_it 3.638 r_mcangle_it 2.329 r_mcbond_it 1.55 r_angle_refined_deg 1.475 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.235 r_symmetry_hbond_refined 0.227 r_nbd_refined 0.207 r_xyhbond_nbd_refined 0.144 r_chiral_restr 0.108 r_bond_refined_d 0.014 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2653 Nucleic Acid Atoms Solvent Atoms 423 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing