☰ Navigation Tabs
Structure of a Synaptic gamma-delta Resolvase Tetramer Covalently Linked to two Cleaved DNAs
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 298 0.2M Sodium Chloride, 0.1M Magnesium Formate, 0.1M Sodium Acetate, pH 4, VAPOR DIFFUSION, HANGING DROP, temperature
25K
Crystal Properties Matthews coefficient Solvent content 4.7 72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.05 α = 90 b = 125.05 β = 90 c = 127.39 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-02-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE A1 0.909 CHESS A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.9 41 94.9 0.094 11.9 3 11577 10987 3.14 1.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.9 94.9 0.094 11.9 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 3.9 34.5 9694 9281 1003 100 0.26975 0.26382 0.2487 0.32237 0.2946 RANDOM 97.11
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.668 r_dihedral_angle_3_deg 20.576 r_dihedral_angle_4_deg 19.575 r_dihedral_angle_1_deg 5.439 r_angle_refined_deg 1.329 r_nbtor_refined 0.31 r_nbd_refined 0.232 r_symmetry_vdw_refined 0.182 r_xyhbond_nbd_refined 0.165 r_symmetry_hbond_refined 0.094
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.668 r_dihedral_angle_3_deg 20.576 r_dihedral_angle_4_deg 19.575 r_dihedral_angle_1_deg 5.439 r_angle_refined_deg 1.329 r_nbtor_refined 0.31 r_nbd_refined 0.232 r_symmetry_vdw_refined 0.182 r_xyhbond_nbd_refined 0.165 r_symmetry_hbond_refined 0.094 r_chiral_restr 0.068 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2838 Nucleic Acid Atoms 1422 Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing