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Crystal Structure of Fet3p, a Multicopper Oxidase that Functions in Iron Import
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 sodium citrate, HEPES, ethylene glycol, ethanol, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.2 62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 168.534 α = 90 b = 168.534 β = 90 c = 174.605 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2004-08-20 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD CUSTOM-MADE 2004-08-20 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 1.37837 APS 19-BM 2 SYNCHROTRON APS BEAMLINE 19-BM 1.37837, 1.37944, 1.34766 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.8 50 99.6 0.081 14.9 3.7 136782 136782 68.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.8 2.95 99.9 0.36 2.3 3.6 20049
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.8 50 127444 127444 6726 98.21 0.22721 0.22721 0.22563 0.2354 0.25742 0.2647 RANDOM 69.824
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.46 -2.23 -4.46 6.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.034 r_dihedral_angle_4_deg 20.443 r_dihedral_angle_3_deg 18.709 r_dihedral_angle_1_deg 6.878 r_angle_refined_deg 1.411 r_scangle_it 1.33 r_scbond_it 0.775 r_mcangle_it 0.366 r_nbtor_refined 0.322 r_symmetry_vdw_refined 0.255
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.034 r_dihedral_angle_4_deg 20.443 r_dihedral_angle_3_deg 18.709 r_dihedral_angle_1_deg 6.878 r_angle_refined_deg 1.411 r_scangle_it 1.33 r_scbond_it 0.775 r_mcangle_it 0.366 r_nbtor_refined 0.322 r_symmetry_vdw_refined 0.255 r_symmetry_hbond_refined 0.249 r_nbd_refined 0.202 r_mcbond_it 0.195 r_xyhbond_nbd_refined 0.133 r_chiral_restr 0.092 r_metal_ion_refined 0.04 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 25524 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 2135
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction CCP4 data scaling CNS phasing