☰ Navigation Tabs
Crystal Structure of the E. coli Phosphoglycerate Kinase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291 PEG 8000, calcium acetate, cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.97 68.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.887 α = 90 b = 77.887 β = 90 c = 195.276 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2004-11-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11587 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 20 33365 32964 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 20 33365 25826 1370 98.46 0.22029 0.21856 0.2207 0.25318 0.2531 RANDOM 45.75
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.54 1.27 2.54 -3.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.958 r_dihedral_angle_3_deg 13.245 r_dihedral_angle_4_deg 12.44 r_dihedral_angle_1_deg 4.453 r_angle_refined_deg 1.496 r_scangle_it 0.894 r_mcangle_it 0.58 r_scbond_it 0.509 r_mcbond_it 0.324 r_nbtor_refined 0.294
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.958 r_dihedral_angle_3_deg 13.245 r_dihedral_angle_4_deg 12.44 r_dihedral_angle_1_deg 4.453 r_angle_refined_deg 1.496 r_scangle_it 0.894 r_mcangle_it 0.58 r_scbond_it 0.509 r_mcbond_it 0.324 r_nbtor_refined 0.294 r_nbd_refined 0.182 r_symmetry_vdw_refined 0.153 r_xyhbond_nbd_refined 0.1 r_symmetry_hbond_refined 0.08 r_chiral_restr 0.053 r_metal_ion_refined 0.04 r_symmetry_metal_ion_refined 0.028 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2882 Nucleic Acid Atoms Solvent Atoms 187 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing