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Crystal structure of the 3-hydroxyacyl-coa dehydrogenase (hbd-9, af2017) from archaeoglobus fulgidus dsm 4304 at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 293 0.08M Tris_base, 0.20M Mg Cl, 0.02M Tris Cl, 24.00% PEG 400, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.88 56.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.331 α = 90 b = 146.331 β = 90 c = 62.73 γ = 120
Symmetry Space Group P 6 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2005-03-31 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97929,0.89194 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 29.07 100 0.089 5.7 10.8 27230
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 100 0.479 1.6 10.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 29 25841 1397 99.93 0.181 0.18088 0.179 0.181 0.221 0.2252 RANDOM 31.236
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.264 r_dihedral_angle_4_deg 18.466 r_dihedral_angle_3_deg 14.09 r_dihedral_angle_1_deg 5.876 r_scangle_it 3.85 r_scbond_it 2.642 r_mcangle_it 1.692 r_angle_refined_deg 1.537 r_mcbond_it 1.26 r_angle_other_deg 0.869
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.264 r_dihedral_angle_4_deg 18.466 r_dihedral_angle_3_deg 14.09 r_dihedral_angle_1_deg 5.876 r_scangle_it 3.85 r_scbond_it 2.642 r_mcangle_it 1.692 r_angle_refined_deg 1.537 r_mcbond_it 1.26 r_angle_other_deg 0.869 r_mcbond_other 0.3 r_symmetry_hbond_refined 0.245 r_symmetry_vdw_other 0.244 r_nbd_refined 0.204 r_nbtor_refined 0.181 r_nbd_other 0.179 r_symmetry_vdw_refined 0.175 r_xyhbond_nbd_refined 0.166 r_chiral_restr 0.1 r_nbtor_other 0.084 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2202 Nucleic Acid Atoms Solvent Atoms 135 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SOLVE phasing