☰ Navigation Tabs
Alkaline phosphatase from human placenta in complex with p-nitrophenyl-phosphonate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 295 PEG, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.74 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.346 α = 90 b = 114.573 β = 90 c = 106.568 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-06-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.98 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.57 99 97.7 0.045 76000 74477
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.57 1.61 80.8 0.411
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.57 24.92 74477 68749 3641 97.23 0.15103 0.14911 0.1603 0.18753 RANDOM 16.34
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.79 -0.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.738 r_dihedral_angle_4_deg 14.593 r_dihedral_angle_3_deg 13.755 r_dihedral_angle_1_deg 6.868 r_sphericity_free 3.157 r_scangle_it 2.98 r_scbond_it 1.974 r_angle_refined_deg 1.417 r_rigid_bond_restr 1.367 r_mcangle_it 1.343
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.738 r_dihedral_angle_4_deg 14.593 r_dihedral_angle_3_deg 13.755 r_dihedral_angle_1_deg 6.868 r_sphericity_free 3.157 r_scangle_it 2.98 r_scbond_it 1.974 r_angle_refined_deg 1.417 r_rigid_bond_restr 1.367 r_mcangle_it 1.343 r_sphericity_bonded 1.287 r_mcbond_it 0.955 r_angle_other_deg 0.873 r_mcbond_other 0.27 r_symmetry_vdw_other 0.248 r_nbd_refined 0.23 r_symmetry_vdw_refined 0.204 r_symmetry_hbond_refined 0.196 r_nbd_other 0.195 r_nbtor_refined 0.183 r_xyhbond_nbd_refined 0.162 r_chiral_restr 0.105 r_nbtor_other 0.085 r_metal_ion_refined 0.083 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3673 Nucleic Acid Atoms Solvent Atoms 761 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling FFT phasing