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The Crystal Structure of Human Liver Receptor Homologue-1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 NaH2PO4, K2HPO4, pH 7.5, temperature 293K, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.83 56.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.01 α = 90 b = 67 β = 90 c = 78.21 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 4 2004-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11587 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 99.37 0.054 10 4.6 10968 10899 65.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.46 100 0.01247 0.6 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 50 10968 10899 595 99.37 0.24161 0.24161 0.23942 0.2411 0.28129 RANDOM 32.206
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.28 -2.04 3.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.261 r_scangle_it 1.213 r_angle_refined_deg 1.034 r_scbond_it 0.729 r_angle_other_deg 0.722 r_mcangle_it 0.396 r_symmetry_hbond_refined 0.372 r_mcbond_it 0.203 r_nbd_other 0.192 r_nbd_refined 0.179
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.261 r_scangle_it 1.213 r_angle_refined_deg 1.034 r_scbond_it 0.729 r_angle_other_deg 0.722 r_mcangle_it 0.396 r_symmetry_hbond_refined 0.372 r_mcbond_it 0.203 r_nbd_other 0.192 r_nbd_refined 0.179 r_xyhbond_nbd_refined 0.164 r_symmetry_vdw_refined 0.153 r_symmetry_vdw_other 0.136 r_nbtor_other 0.087 r_chiral_restr 0.053 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2069 Nucleic Acid Atoms Solvent Atoms 35 Heterogen Atoms 66
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling EPMR phasing