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Crystal structure of human transthyretin with bound chloride
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 291 ammonium sulphate, sodium citrate, polyethyleneglycol, sodium chloride, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.08 40.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.659 α = 90 b = 85.587 β = 90 c = 63.49 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MACSCIENCE 2002-10-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 100 0.086 18946 18946
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 100 0.575
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.9 19.69 18946 17967 979 100 0.21 0.20063 0.19953 0.2103 0.22141 0.2255 RANDOM 15.362
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.601 r_dihedral_angle_1_deg 3.393 r_scangle_it 2.817 r_scbond_it 1.61 r_mcangle_it 1.208 r_angle_refined_deg 1.177 r_angle_other_deg 0.692 r_mcbond_it 0.626 r_symmetry_vdw_other 0.207 r_nbd_other 0.202
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.601 r_dihedral_angle_1_deg 3.393 r_scangle_it 2.817 r_scbond_it 1.61 r_mcangle_it 1.208 r_angle_refined_deg 1.177 r_angle_other_deg 0.692 r_mcbond_it 0.626 r_symmetry_vdw_other 0.207 r_nbd_other 0.202 r_nbd_refined 0.197 r_symmetry_vdw_refined 0.166 r_symmetry_hbond_refined 0.162 r_xyhbond_nbd_refined 0.13 r_chiral_restr 0.073 r_xyhbond_nbd_other 0.025 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1785 Nucleic Acid Atoms Solvent Atoms 136 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing