X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.52936.00% PEG 6000, 0.65M Lithium Chloride, 0.10M Sodium Citrate, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.564.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 178.866α = 90
b = 178.866β = 90
c = 80.864γ = 120
Symmetry
Space GroupP 62 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2004-12-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-D1.00863APS23-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.355093.90.05324.47.5302333023322
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.352.41195.30.3954.87.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1F822.3524.812869028690153693.970.176120.173640.173640.22216RANDOM43.78
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.090.040.09-0.13
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.966
r_dihedral_angle_4_deg22.863
r_dihedral_angle_3_deg17.414
r_dihedral_angle_1_deg7.782
r_scangle_it5.253
r_scbond_it3.588
r_mcangle_it2.283
r_angle_refined_deg2.031
r_mcbond_it1.831
r_angle_other_deg1.046
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.966
r_dihedral_angle_4_deg22.863
r_dihedral_angle_3_deg17.414
r_dihedral_angle_1_deg7.782
r_scangle_it5.253
r_scbond_it3.588
r_mcangle_it2.283
r_angle_refined_deg2.031
r_mcbond_it1.831
r_angle_other_deg1.046
r_symmetry_vdw_refined0.375
r_mcbond_other0.3
r_symmetry_vdw_other0.25
r_symmetry_hbond_refined0.235
r_metal_ion_refined0.23
r_nbd_refined0.214
r_nbd_other0.203
r_nbtor_refined0.187
r_xyhbond_nbd_refined0.17
r_chiral_restr0.132
r_nbtor_other0.096
r_bond_refined_d0.027
r_gen_planes_refined0.009
r_bond_other_d0.006
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3322
Nucleic Acid Atoms
Solvent Atoms197
Heterogen Atoms14

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement