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Co-Crystal Structure of Lif1p-Lig4p
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 Tris-HCl, Sodium Chloride, Dithiothreitol, PEG 6000, 2-(N-morpholino)ethanesulfonic acid, Ethylene Glycol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 5 75.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 247.617 α = 90 b = 247.617 β = 90 c = 98.416 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH SI-111 DOUBLE MONOCHROMATOR 2004-08-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID13 ESRF ID13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.92 49.2 99.8 0.175 0.175 5.7 10.1 16493 16475 2.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.92 3.99 99.6 0.799 0.799
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 3.92 49.2 15638 15638 832 99.8 0.403 0.4 0.398 0.467 0.4572 RANDOM 107.705
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.31 0.65 1.31 -1.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.914 r_dihedral_angle_3_deg 25.971 r_dihedral_angle_4_deg 20.912 r_dihedral_angle_1_deg 10.166 r_scangle_it 2.151 r_angle_refined_deg 2.13 r_angle_other_deg 1.987 r_scbond_it 1.203 r_mcangle_it 1.042 r_mcbond_it 0.596
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.914 r_dihedral_angle_3_deg 25.971 r_dihedral_angle_4_deg 20.912 r_dihedral_angle_1_deg 10.166 r_scangle_it 2.151 r_angle_refined_deg 2.13 r_angle_other_deg 1.987 r_scbond_it 1.203 r_mcangle_it 1.042 r_mcbond_it 0.596 r_nbd_refined 0.33 r_symmetry_vdw_refined 0.325 r_nbtor_refined 0.324 r_nbd_other 0.323 r_xyhbond_nbd_refined 0.257 r_nbtor_other 0.254 r_symmetry_hbond_refined 0.218 r_chiral_restr 0.132 r_mcbond_other 0.094 r_bond_refined_d 0.016 r_bond_other_d 0.012 r_gen_planes_refined 0.007 r_gen_planes_other 0.005 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4164 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALEPACK data scaling SHARP phasing