1YZI

A novel quaternary structure of human carbonmonoxy hemoglobin


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1HHOPDB entry 1HHO

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1SMALL TUBES7.1298sodium/potassium phosphate, toluene, pH 7.1, SMALL TUBES, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.5651

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 61.464α = 90
b = 61.464β = 90
c = 174.75γ = 90
Symmetry
Space GroupP 41 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray120IMAGE PLATERIGAKU RAXIS IImirrors2002-04-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.075895.20.06713.15.6203102133029
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.072.276.70.25322.72522

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 1HHO2.0758203102031010431000.2240.2080.2080.257RANDOM47.4
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.033.03-6.07
RMS Deviations
KeyRefinement Restraint Deviation
c_dihedral_angle_d20.2
c_angle_deg2.2
c_improper_angle_d1.81
c_bond_d0.018
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2192
Nucleic Acid Atoms
Solvent Atoms136
Heterogen Atoms111

Software

Software
Software NamePurpose
CNSrefinement
bioteXdata reduction
CCP4data scaling
AMoREphasing