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Solution Structure of Bacillus subtilis Protein ysnE: The Northeast Structural Genomics Consortium Target SR220
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 GFT (4,3)D HNNCABCA NMR Buffer 6.5 -- 5% D2O, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5 90% H2O/10% D2O 6.5 ambient 298 2 GFT (4,3)D CABCA(CO)NHN NMR Buffer 6.5 -- 5% D2O, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5 90% H2O/10% D2O 6.5 ambient 298 3 GFT (4,3)D HABCAB(CO)NHN NMR Buffer 6.5 -- 5% D2O, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5 90% H2O/10% D2O 6.5 ambient 298 4 GFT (4,3) HCCH NMR Buffer 6.5 -- 5% D2O, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5 90% H2O/10% D2O 6.5 ambient 298 5 Simultaneous Heteronuclear Resolved [1H,1H]-NOESY NMR Buffer 6.5 -- 5% D2O, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES, pH 6.5 90% H2O/10% D2O 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 750 2 Varian INOVA 600
NMR Refinement Method Details Software distance geometry
simulated annealing
torsion angle dynamics DYANA
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (fewest violations)
Additional NMR Experimental Information Details This structure was determined using GFT NMR techniques.
Computation: NMR Software # Classification Version Software Name Author 1 structure solution DYANA 1.5 Guentert, P. 2 processing NMRPipe 2.3 Delaglio, F. 3 data analysis XEASY 1.3.1.3 Bartels, C 4 refinement DYANA 1.5 Guentert