☰ Navigation Tabs
Crystal Structure of Mycobacterium Tuberculosis Protein Tyrosine Phosphatase PtpB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 277 0.05M KH2PO4, 20% PEG8000, 10mM NaAcetate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.63 56.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.068 α = 90 b = 113.068 β = 90 c = 53.292 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 4 2004-11-06 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1157, 0.97949, 0.97973, 0.93927 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 79 91.2 0.041 66.7 33939 33939 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.76 48.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.71 79 36301 32240 1692 93.47 0.17755 0.17755 0.17567 0.21361 0.2282 RANDOM 28.706
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.99 -1.99 3.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.557 r_scangle_it 4.729 r_scbond_it 2.805 r_mcangle_it 1.788 r_angle_refined_deg 1.676 r_mcbond_it 0.978 r_angle_other_deg 0.915 r_symmetry_vdw_other 0.295 r_symmetry_vdw_refined 0.26 r_nbd_other 0.251
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.557 r_scangle_it 4.729 r_scbond_it 2.805 r_mcangle_it 1.788 r_angle_refined_deg 1.676 r_mcbond_it 0.978 r_angle_other_deg 0.915 r_symmetry_vdw_other 0.295 r_symmetry_vdw_refined 0.26 r_nbd_other 0.251 r_nbd_refined 0.22 r_symmetry_hbond_refined 0.205 r_xyhbond_nbd_refined 0.173 r_nbtor_other 0.087 r_chiral_restr 0.084 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_gen_planes_other 0.005 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1858 Nucleic Acid Atoms Solvent Atoms 264 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing