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Fully reduced state of nigerythrin (all ferrous)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIQUID DIFFUSION 7.3 298 0.2 M CaCl2 20% PEG 3350, pH 7.3, LIQUID DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.2 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.773 α = 90 b = 72.907 β = 90 c = 118.905 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 118 CCD ADSC QUANTUM 4 2004-11-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F2 0.98 CHESS F2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 23.72 98.3 65921 64794 2 2 12.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.54 93
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.5 23.72 65921 64794 3292 98.3 0.191 0.191 0.191 0.1868 0.206 0.202 RANDOM 13.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.17 -1.04 -2.13
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 20.9 c_angle_deg 1.1 c_improper_angle_d 0.82 c_scangle_it 0.44 c_mcangle_it 0.42 c_scbond_it 0.27 c_mcbond_it 0.23 c_bond_d 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3096 Nucleic Acid Atoms Solvent Atoms 617 Heterogen Atoms 6
Software Software Software Name Purpose CNS refinement DENZO data reduction SCALEPACK data scaling SHARP phasing