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Reindeer beta-lactoglobulin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BEB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277 2.6M Na malonate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.1 40.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.24 α = 90 b = 94.14 β = 105.76 c = 64.15 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.731140 ESRF ID29
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1BEB 2.1 19.96 63710 60524 3186 100 0.23879 0.23503 0.2364 0.31144 0.3045 RANDOM 33.539
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 0.18 3.87 -3.51 0.01 5.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.197 r_scangle_it 2.8 r_scbond_it 1.704 r_angle_refined_deg 1.558 r_mcangle_it 1.281 r_angle_other_deg 0.911 r_mcbond_it 0.693 r_symmetry_hbond_refined 0.266 r_symmetry_vdw_refined 0.26 r_nbd_other 0.249
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.197 r_scangle_it 2.8 r_scbond_it 1.704 r_angle_refined_deg 1.558 r_mcangle_it 1.281 r_angle_other_deg 0.911 r_mcbond_it 0.693 r_symmetry_hbond_refined 0.266 r_symmetry_vdw_refined 0.26 r_nbd_other 0.249 r_nbd_refined 0.222 r_symmetry_vdw_other 0.217 r_xyhbond_nbd_refined 0.203 r_nbtor_other 0.149 r_chiral_restr 0.088 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9684 Nucleic Acid Atoms Solvent Atoms 361 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ProDC data collection XDS data scaling MOLREP phasing