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Structure of Native Human Beta B2 Crystallin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 280 MPD, cacodylate, DTT, magnesium chloride, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 280K
Crystal Properties Matthews coefficient Solvent content 3.67 66.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.892 α = 90 b = 82.324 β = 90 c = 108.104 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2002-07-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 34.4 95.2 36271 35758 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 34.4 95.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 34.4 34402 1814 95.18 0.18067 0.17971 0.2424 0.19849 0.2467 RANDOM 17.388
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.02 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.594 r_dihedral_angle_4_deg 15.469 r_dihedral_angle_3_deg 12.358 r_dihedral_angle_1_deg 6.732 r_scangle_it 3.379 r_scbond_it 2.416 r_mcangle_it 1.464 r_angle_refined_deg 1.434 r_mcbond_it 1.325 r_angle_other_deg 0.776
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.594 r_dihedral_angle_4_deg 15.469 r_dihedral_angle_3_deg 12.358 r_dihedral_angle_1_deg 6.732 r_scangle_it 3.379 r_scbond_it 2.416 r_mcangle_it 1.464 r_angle_refined_deg 1.434 r_mcbond_it 1.325 r_angle_other_deg 0.776 r_symmetry_vdw_other 0.315 r_xyhbond_nbd_refined 0.215 r_mcbond_other 0.198 r_nbd_other 0.195 r_nbd_refined 0.194 r_symmetry_hbond_refined 0.193 r_nbtor_refined 0.18 r_symmetry_vdw_refined 0.151 r_nbtor_other 0.088 r_chiral_restr 0.083 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1469 Nucleic Acid Atoms Solvent Atoms 206 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling MOLREP phasing