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Crystal Structure of the ATP binding domain of PrrB from Mycobacterium Tuberculosis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 292 PEG200DME, Ca acetate, Bis Tris Propane, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.5 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.476 α = 90 b = 61.476 β = 90 c = 211.333 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2004-03-20 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARRESEARCH 2004-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 1.00 ALS 5.0.1 2 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 0.92 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.9 20 97.7 0.075 31.5 8.27 34641 32808 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 87.1 0.66 2 8 3087
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 19.97 34641 32808 1730 97.65 0.18851 0.18851 0.18596 0.23523 0.2356 RANDOM 35.732
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.447 r_dihedral_angle_4_deg 19.285 r_dihedral_angle_3_deg 15.754 r_scangle_it 8.458 r_dihedral_angle_1_deg 6.052 r_scbond_it 5.282 r_mcangle_it 2.395 r_angle_refined_deg 1.901 r_mcbond_it 1.409 r_symmetry_hbond_refined 0.378
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.447 r_dihedral_angle_4_deg 19.285 r_dihedral_angle_3_deg 15.754 r_scangle_it 8.458 r_dihedral_angle_1_deg 6.052 r_scbond_it 5.282 r_mcangle_it 2.395 r_angle_refined_deg 1.901 r_mcbond_it 1.409 r_symmetry_hbond_refined 0.378 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.255 r_nbd_refined 0.208 r_xyhbond_nbd_refined 0.188 r_chiral_restr 0.138 r_bond_refined_d 0.022 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2968 Nucleic Acid Atoms Solvent Atoms 206 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SHELXS phasing