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Crystal Structure Of Trp Repressor Binding Protein Wrba in complex with FMN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.5 293 2.6M AMSULFATE, 20% GLYCEROL, pH 4.5, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.6 52.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.327 α = 90 b = 122.327 β = 90 c = 208.735 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-08-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID .9793 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 20 0.17 5.6 3.8 32107 32107 -3 60.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.1 3.21 97 0.32 4.5 3169
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.11 20 -3 32058 32055 1632 97.05 0.19954 0.19954 0.1978 0.2037 0.2332 0.2412 RANDOM 32.47
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.28 -0.14 -0.28 0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.117 r_dihedral_angle_3_deg 17.036 r_dihedral_angle_4_deg 12.514 r_dihedral_angle_1_deg 5.8 r_scangle_it 1.528 r_angle_refined_deg 1.159 r_scbond_it 0.986 r_angle_other_deg 0.871 r_mcangle_it 0.56 r_mcbond_it 0.515
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.117 r_dihedral_angle_3_deg 17.036 r_dihedral_angle_4_deg 12.514 r_dihedral_angle_1_deg 5.8 r_scangle_it 1.528 r_angle_refined_deg 1.159 r_scbond_it 0.986 r_angle_other_deg 0.871 r_mcangle_it 0.56 r_mcbond_it 0.515 r_symmetry_hbond_refined 0.215 r_nbd_refined 0.201 r_symmetry_vdw_refined 0.2 r_nbtor_refined 0.181 r_nbd_other 0.18 r_symmetry_vdw_other 0.173 r_xyhbond_nbd_refined 0.147 r_nbtor_other 0.08 r_xyhbond_nbd_other 0.057 r_chiral_restr 0.056 r_mcbond_other 0.056 r_bond_refined_d 0.012 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11977 Nucleic Acid Atoms Solvent Atoms 161 Heterogen Atoms 248
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing