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Crystal structure of YHI9, the yeast member of the phenazine biosynthesis PhzF enzyme superfamily.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 293 24% PEG 4000, 0.1M sodium acetate pH5, 0.2M ammonium acetate, 30% glycerol, 10mM DDT, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.188 α = 90 b = 81.188 β = 90 c = 98.146 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2003-05-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.04 62.5 98.4 21203 21044 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.043 2.096 92.69
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.05 40 0.4 21044 19923 1081 98.08 0.1908 0.1908 0.18763 0.1987 0.25112 0.2502 RANDOM 33.236
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.13 1.13 -2.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.745 r_dihedral_angle_3_deg 16.104 r_dihedral_angle_4_deg 14.387 r_dihedral_angle_1_deg 6.876 r_scangle_it 3.308 r_scbond_it 2.399 r_angle_refined_deg 1.667 r_mcangle_it 1.664 r_mcbond_it 1.424 r_angle_other_deg 0.846
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.745 r_dihedral_angle_3_deg 16.104 r_dihedral_angle_4_deg 14.387 r_dihedral_angle_1_deg 6.876 r_scangle_it 3.308 r_scbond_it 2.399 r_angle_refined_deg 1.667 r_mcangle_it 1.664 r_mcbond_it 1.424 r_angle_other_deg 0.846 r_symmetry_vdw_other 0.257 r_mcbond_other 0.236 r_nbd_refined 0.207 r_nbd_other 0.189 r_symmetry_vdw_refined 0.187 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.182 r_symmetry_hbond_refined 0.179 r_chiral_restr 0.098 r_nbtor_other 0.092 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2292 Nucleic Acid Atoms Solvent Atoms 154 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SOLVE phasing